J4_9YPO_012

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9YPO|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|4587
9YPO|1|5|U|4588
9YPO|1|5|A|4589
9YPO|1|5|A|4590
*
9YPO|1|5|U|4620
9YPO|1|5|C|4621
*
9YPO|1|5|G|4676
9YPO|1|5|U|4677
9YPO|1|5|G|4678
*
9YPO|1|5|C|4712
9YPO|1|5|G|4713
9YPO|1|5|C|4714
9YPO|1|5|C|4715

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Ribosomal protein L23