J4_9YPO_013

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9YPO|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|C|98
9YPO|1|9|A|99
9YPO|1|9|U|100
9YPO|1|9|U|101
9YPO|1|9|A|102
9YPO|1|9|A|103
9YPO|1|9|A|104
9YPO|1|9|U|105
9YPO|1|9|C|106
*
9YPO|1|9|G|355
9YPO|1|9|C|356
9YPO|1|9|C|357
*
9YPO|1|9|G|405
9YPO|1|9|U|406
9YPO|1|9|G|407
9YPO|1|9|A|408
9YPO|1|9|C|409
*
9YPO|1|9|G|431
9YPO|1|9|G|432

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain XX

uS12