J4_9YPS_010
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9YPS|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPS|1|5|C|3696
9YPS|1|5|U|3697
9YPS|1|5|G|3698
*
9YPS|1|5|C|3752
9YPS|1|5|G|3753
*
9YPS|1|5|C|3771
9YPS|1|5|U|3772
9YPS|1|5|U|3773
9YPS|1|5|A|3774
9YPS|1|5|A|3775
9YPS|1|5|G|3776
9YPS|1|5|G|3777
9YPS|1|5|U|3778
9YPS|1|5|A|3779
9YPS|1|5|G|3780
*
9YPS|1|5|U|3814
9YPS|1|5|G|3815
9YPS|1|5|A|3816
9YPS|1|5|A|3817
9YPS|1|5|U|3818
9YPS|1|5|G|3819
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain n
- eL41
Coloring options: