J4_9YPT_010

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9YPT|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|3696
9YPT|1|5|U|3697
9YPT|1|5|G|3698
*
9YPT|1|5|C|3752
9YPT|1|5|G|3753
*
9YPT|1|5|C|3771
9YPT|1|5|U|3772
9YPT|1|5|U|3773
9YPT|1|5|A|3774
9YPT|1|5|A|3775
9YPT|1|5|G|3776
9YPT|1|5|G|3777
9YPT|1|5|U|3778
9YPT|1|5|A|3779
9YPT|1|5|G|3780
*
9YPT|1|5|U|3814
9YPT|1|5|G|3815
9YPT|1|5|A|3816
9YPT|1|5|A|3817
9YPT|1|5|U|3818
9YPT|1|5|G|3819

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41