J4_9YPT_012

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

9YPT|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|4231
9YPT|1|5|U|4232
9YPT|1|5|A|4233
9YPT|1|5|A|4234
9YPT|1|5|G|4235
*
9YPT|1|5|U|4289
9YPT|1|5|U|4290
9YPT|1|5|G|4291
9YPT|1|5|A|4292
9YPT|1|5|U|4293
*
9YPT|1|5|A|4317
9YPT|1|5|C|4318
9YPT|1|5|C|4319
*
9YPT|1|5|G|4328
9YPT|1|5|G|4329
9YPT|1|5|G|4330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18

Chain T

eL21

Chain b

Large ribosomal subunit protein eL29

Chain o

Large ribosomal subunit protein eL42