J4_9YPV_006

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9YPV|1|5|A|2366, 9YPV|1|5|U|2369, 9YPV|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|2365
9YPV|1|5|A|2366
9YPV|1|5|A|2367
9YPV|1|5|A|2368
9YPV|1|5|U|2369
9YPV|1|5|A|2370
9YPV|1|5|U|2371
*
9YPV|1|5|A|2389
9YPV|1|5|G|2390
9YPV|1|5|G|2391
*
9YPV|1|5|C|2824
9YPV|1|5|A|2825
9YPV|1|5|U|2826
9YPV|1|5|G|2827
9YPV|1|5|U|2828
9YPV|1|5|U|2829
*
9YPV|1|5|A|3856
9YPV|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain d

eL31