J4_9YPV_010

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9YPV|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|3696
9YPV|1|5|U|3697
9YPV|1|5|G|3698
*
9YPV|1|5|C|3752
9YPV|1|5|G|3753
*
9YPV|1|5|C|3771
9YPV|1|5|U|3772
9YPV|1|5|U|3773
9YPV|1|5|A|3774
9YPV|1|5|A|3775
9YPV|1|5|G|3776
9YPV|1|5|G|3777
9YPV|1|5|U|3778
9YPV|1|5|A|3779
9YPV|1|5|G|3780
*
9YPV|1|5|U|3814
9YPV|1|5|G|3815
9YPV|1|5|A|3816
9YPV|1|5|A|3817
9YPV|1|5|U|3818
9YPV|1|5|G|3819

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41