J4_9YPV_012

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9YPV|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|G|4587
9YPV|1|5|U|4588
9YPV|1|5|A|4589
9YPV|1|5|A|4590
*
9YPV|1|5|U|4620
9YPV|1|5|C|4621
*
9YPV|1|5|G|4676
9YPV|1|5|U|4677
9YPV|1|5|G|4678
*
9YPV|1|5|C|4712
9YPV|1|5|G|4713
9YPV|1|5|C|4714
9YPV|1|5|C|4715

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Ribosomal protein L23