J4_9YPV_013

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9YPV|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|C|98
9YPV|1|9|A|99
9YPV|1|9|U|100
9YPV|1|9|U|101
9YPV|1|9|A|102
9YPV|1|9|A|103
9YPV|1|9|A|104
9YPV|1|9|U|105
9YPV|1|9|C|106
*
9YPV|1|9|G|355
9YPV|1|9|C|356
9YPV|1|9|C|357
*
9YPV|1|9|G|405
9YPV|1|9|U|406
9YPV|1|9|G|407
9YPV|1|9|A|408
9YPV|1|9|C|409
*
9YPV|1|9|G|431
9YPV|1|9|G|432

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain XX

uS12