J4_9YPV_014
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9YPV|1|9|A|672, 9YPV|1|9|A|1083, 9YPV|1|9|C|1085, 9YPV|1|9|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|9|A|671
9YPV|1|9|A|672
9YPV|1|9|G|673
*
9YPV|1|9|C|1032
9YPV|1|9|G|1033
9YPV|1|9|A|1034
9YPV|1|9|A|1035
9YPV|1|9|A|1036
9YPV|1|9|G|1037
*
9YPV|1|9|C|1078
9YPV|1|9|C|1079
9YPV|1|9|A|1080
9YPV|1|9|U|1081
9YPV|1|9|A|1082
9YPV|1|9|A|1083
9YPV|1|9|A|1084
9YPV|1|9|C|1085
9YPV|1|9|G|1086
9YPV|1|9|A|1087
9YPV|1|9|U|1088
9YPV|1|9|G|1089
*
9YPV|1|9|U|1160
9YPV|1|9|U|1161
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Ribosomal protein S11
- Chain NN
- Ribosomal protein S13
- Chain OO
- Small ribosomal subunit protein uS11
- Chain WW
- Ribosomal protein S15a
- Chain XX
- uS12
- Chain aa
- 40S ribosomal protein S26
- Chain n
- eL41
- Chain p
- eL43
Coloring options: