J4_9YPY_011

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9YPY|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|C|3696
9YPY|1|5|U|3697
9YPY|1|5|G|3698
*
9YPY|1|5|C|3752
9YPY|1|5|G|3753
*
9YPY|1|5|C|3771
9YPY|1|5|U|3772
9YPY|1|5|U|3773
9YPY|1|5|A|3774
9YPY|1|5|A|3775
9YPY|1|5|G|3776
9YPY|1|5|G|3777
9YPY|1|5|U|3778
9YPY|1|5|A|3779
9YPY|1|5|G|3780
*
9YPY|1|5|U|3814
9YPY|1|5|G|3815
9YPY|1|5|A|3816
9YPY|1|5|A|3817
9YPY|1|5|U|3818
9YPY|1|5|G|3819

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41