J4_9YPZ_005

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9YPZ|1|5|A|2366, 9YPZ|1|5|U|2369, 9YPZ|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|2365
9YPZ|1|5|A|2366
9YPZ|1|5|A|2367
9YPZ|1|5|A|2368
9YPZ|1|5|U|2369
9YPZ|1|5|A|2370
9YPZ|1|5|U|2371
*
9YPZ|1|5|A|2389
9YPZ|1|5|G|2390
9YPZ|1|5|G|2391
*
9YPZ|1|5|C|2824
9YPZ|1|5|A|2825
9YPZ|1|5|U|2826
9YPZ|1|5|G|2827
9YPZ|1|5|U|2828
9YPZ|1|5|U|2829
*
9YPZ|1|5|A|3856
9YPZ|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain d

eL31