J4_9YPZ_009

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9YPZ|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|3696
9YPZ|1|5|U|3697
9YPZ|1|5|G|3698
*
9YPZ|1|5|C|3752
9YPZ|1|5|G|3753
*
9YPZ|1|5|C|3771
9YPZ|1|5|U|3772
9YPZ|1|5|U|3773
9YPZ|1|5|A|3774
9YPZ|1|5|A|3775
9YPZ|1|5|G|3776
9YPZ|1|5|G|3777
9YPZ|1|5|U|3778
9YPZ|1|5|A|3779
9YPZ|1|5|G|3780
*
9YPZ|1|5|U|3814
9YPZ|1|5|G|3815
9YPZ|1|5|A|3816
9YPZ|1|5|A|3817
9YPZ|1|5|U|3818
9YPZ|1|5|G|3819

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41