J4_9YQ1_005

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9YQ1|1|5|A|2366, 9YQ1|1|5|U|2369, 9YQ1|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|2365
9YQ1|1|5|A|2366
9YQ1|1|5|A|2367
9YQ1|1|5|A|2368
9YQ1|1|5|U|2369
9YQ1|1|5|A|2370
9YQ1|1|5|U|2371
*
9YQ1|1|5|A|2389
9YQ1|1|5|G|2390
9YQ1|1|5|G|2391
*
9YQ1|1|5|C|2824
9YQ1|1|5|A|2825
9YQ1|1|5|U|2826
9YQ1|1|5|G|2827
9YQ1|1|5|U|2828
9YQ1|1|5|U|2829
*
9YQ1|1|5|A|3856
9YQ1|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain d

eL31