J4_9YQ1_013

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9YQ1|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|98
9YQ1|1|9|A|99
9YQ1|1|9|U|100
9YQ1|1|9|U|101
9YQ1|1|9|A|102
9YQ1|1|9|A|103
9YQ1|1|9|A|104
9YQ1|1|9|U|105
9YQ1|1|9|C|106
*
9YQ1|1|9|G|355
9YQ1|1|9|C|356
9YQ1|1|9|C|357
*
9YQ1|1|9|G|405
9YQ1|1|9|U|406
9YQ1|1|9|G|407
9YQ1|1|9|A|408
9YQ1|1|9|C|409
*
9YQ1|1|9|G|431
9YQ1|1|9|G|432

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain XX

uS12