J4_9ZTL_002

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9ZTL|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9ZTL_002 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5666

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9ZTL|1|A|G|115
9ZTL|1|A|A|116
9ZTL|1|A|G|117
9ZTL|1|A|U|118
9ZTL|1|A|A|119
9ZTL|1|A|A|120
9ZTL|1|A|U|121
9ZTL|1|A|G|122
*
9ZTL|1|A|U|239
9ZTL|1|A|G|240
*
9ZTL|1|A|C|286
9ZTL|1|A|U|287
9ZTL|1|A|A|288
9ZTL|1|A|G|289
*
9ZTL|1|A|C|311
9ZTL|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17