J4_9ZTL_006

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9ZTL_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1161

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9ZTL|1|a|G|297
9ZTL|1|a|G|298
9ZTL|1|a|A|299
9ZTL|1|a|A|300
9ZTL|1|a|G|301
*
9ZTL|1|a|C|316
9ZTL|1|a|G|317
9ZTL|1|a|C|318
9ZTL|1|a|G|319
*
9ZTL|1|a|C|323
9ZTL|1|a|A|324
9ZTL|1|a|G|325
*
9ZTL|1|a|C|337
9ZTL|1|a|G|338
9ZTL|1|a|U|339
9ZTL|1|a|A|340
9ZTL|1|a|C|341

Current chains

Chain a

23s rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24