J4_9ZTL_012

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9ZTL_012 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.123

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9ZTL|1|a|A|1772
9ZTL|1|a|A|1773
9ZTL|1|a|C|1774
9ZTL|1|a|U|1775
9ZTL|1|a|G|1776
*
9ZTL|1|a|C|1788
9ZTL|1|a|A|1789
9ZTL|1|a|C|1790
9ZTL|1|a|A|1791
9ZTL|1|a|G|1792
*
9ZTL|1|a|U|1827
9ZTL|1|a|G|1828
9ZTL|1|a|A|1829
9ZTL|1|a|C|1830
*
9ZTL|1|a|G|1975
9ZTL|1|a|U|1976
9ZTL|1|a|A|1977
9ZTL|1|a|A|1978
9ZTL|1|a|U|1979

Current chains

Chain a

23s rRNA

Nearby chains

Chain c

50S ribosomal protein L2