J5_10FZ_003

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

10FZ|1|A|A|60, 10FZ|1|A|A|109, 10FZ|1|A|C|352, 10FZ|1|A|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10FZ|1|A|C|58
10FZ|1|A|A|59
10FZ|1|A|A|60
10FZ|1|A|G|61
*
10FZ|1|A|C|106
10FZ|1|A|G|107
10FZ|1|A|G|108
10FZ|1|A|A|109
10FZ|1|A|C|110
10FZ|1|A|G|111
10FZ|1|A|G|112
10FZ|1|A|G|113
*
10FZ|1|A|C|314
10FZ|1|A|A|315
10FZ|1|A|C|316
*
10FZ|1|A|G|337
10FZ|1|A|A|338
10FZ|1|A|C|339
*
10FZ|1|A|G|350
10FZ|1|A|G|351
10FZ|1|A|C|352
10FZ|1|A|A|353
10FZ|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20