J5_11BQ_004

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

11BQ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11BQ_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0634

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.4

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

11BQ|1|a|C|47
11BQ|1|a|G|48
11BQ|1|a|A|49
11BQ|1|a|U|50
11BQ|1|a|G|51
11BQ|1|a|A|52
11BQ|1|a|A|53
11BQ|1|a|G|54
*
11BQ|1|a|C|116
11BQ|1|a|G|117
11BQ|1|a|A|118
11BQ|1|a|A|119
11BQ|1|a|U|120
11BQ|1|a|G|121
*
11BQ|1|a|C|130
11BQ|1|a|A|131
*
11BQ|1|a|U|148
11BQ|1|a|A|149
11BQ|1|a|U|150
*
11BQ|1|a|A|176
11BQ|1|a|G|177
11BQ|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34