J5_8B0X_004

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8B0X|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8B0X|1|a|C|47
8B0X|1|a|G|48
8B0X|1|a|A|49
8B0X|1|a|U|50
8B0X|1|a|G|51
8B0X|1|a|A|52
8B0X|1|a|A|53
8B0X|1|a|G|54
*
8B0X|1|a|C|116
8B0X|1|a|G|117
8B0X|1|a|A|118
8B0X|1|a|A|119
8B0X|1|a|U|120
8B0X|1|a|G|121
*
8B0X|1|a|C|130
8B0X|1|a|A|131
*
8B0X|1|a|U|148
8B0X|1|a|A|149
8B0X|1|a|U|150
*
8B0X|1|a|A|176
8B0X|1|a|G|177
8B0X|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23