J5_11BQ_007
3D structure
- PDB id
- 11BQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 11BQ|1|a|U|1758, 11BQ|1|a|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11BQ_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2531
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
11BQ|1|a|G|1674
11BQ|1|a|C|1675
11BQ|1|a|A|1676
11BQ|1|a|A|1677
11BQ|1|a|A|1678
11BQ|1|a|A|1679
11BQ|1|a|U|1680
11BQ|1|a|G|1681
11BQ|1|a|G|1682
*
11BQ|1|a|C|1706
11BQ|1|a|G|1707
*
11BQ|1|a|U|1751
11BQ|1|a|C|1752
*
11BQ|1|a|G|1756
11BQ|1|a|A|1757
11BQ|1|a|U|1758
11BQ|1|a|A|1759
11BQ|1|a|C|1760
11BQ|1|a|C|1761
11BQ|1|a|A|1762
11BQ|1|a|G|1763
11BQ|1|a|C|1764
*
11BQ|1|a|G|1988
11BQ|1|a|G|1989
11BQ|1|a|C|1990
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: