J5_7A0S_005

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

7A0S|1|X|G|1749, 7A0S|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7A0S|1|X|G|1691
7A0S|1|X|C|1692
7A0S|1|X|A|1693
7A0S|1|X|A|1694
7A0S|1|X|U|1695
7A0S|1|X|C|1696
7A0S|1|X|U|1697
7A0S|1|X|C|1698
7A0S|1|X|A|1699
*
7A0S|1|X|U|1723
7A0S|1|X|C|1724
*
7A0S|1|X|G|1742
7A0S|1|X|C|1743
*
7A0S|1|X|G|1747
7A0S|1|X|U|1748
7A0S|1|X|G|1749
7A0S|1|X|A|1750
7A0S|1|X|A|1751
7A0S|1|X|U|1752
7A0S|1|X|A|1753
7A0S|1|X|G|1754
7A0S|1|X|G|1755
*
7A0S|1|X|C|1971
7A0S|1|X|G|1972
7A0S|1|X|C|1973

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19