J5_11DG_004

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

11DG|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|C|47
11DG|1|a|G|48
11DG|1|a|A|49
11DG|1|a|U|50
11DG|1|a|G|51
11DG|1|a|A|52
11DG|1|a|A|53
11DG|1|a|G|54
*
11DG|1|a|C|116
11DG|1|a|G|117
11DG|1|a|A|118
11DG|1|a|A|119
11DG|1|a|U|120
11DG|1|a|G|121
*
11DG|1|a|C|130
11DG|1|a|A|131
*
11DG|1|a|U|148
11DG|1|a|A|149
11DG|1|a|U|150
*
11DG|1|a|A|176
11DG|1|a|G|177
11DG|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34