J5_11FV_002

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

11FV|1|C|A|103, 11FV|1|C|C|346, 11FV|1|C|A|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11FV_002 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1424

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

11FV|1|C|C|58
11FV|1|C|A|59
11FV|1|C|A|60
11FV|1|C|G|61
*
11FV|1|C|C|100
11FV|1|C|G|101
11FV|1|C|G|102
11FV|1|C|A|103
11FV|1|C|C|104
11FV|1|C|G|105
11FV|1|C|G|106
11FV|1|C|G|107
*
11FV|1|C|C|308
11FV|1|C|A|309
11FV|1|C|C|310
*
11FV|1|C|G|331
11FV|1|C|A|332
11FV|1|C|C|333
*
11FV|1|C|G|344
11FV|1|C|G|345
11FV|1|C|C|346
11FV|1|C|A|347
11FV|1|C|G|348

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20

Chain S

Large ribosomal subunit protein uL14

Chain x

Small ribosomal subunit protein bS16