J5_11FV_006
3D structure
- PDB id
- 11FV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 11FV|1|I|U|1758, 11FV|1|I|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11FV_006 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2596
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
11FV|1|I|G|1674
11FV|1|I|C|1675
11FV|1|I|A|1676
11FV|1|I|A|1677
11FV|1|I|A|1678
11FV|1|I|A|1679
11FV|1|I|U|1680
11FV|1|I|G|1681
11FV|1|I|G|1682
*
11FV|1|I|C|1706
11FV|1|I|G|1707
*
11FV|1|I|U|1751
11FV|1|I|C|1752
*
11FV|1|I|G|1756
11FV|1|I|A|1757
11FV|1|I|U|1758
11FV|1|I|A|1759
11FV|1|I|C|1760
11FV|1|I|C|1761
11FV|1|I|A|1762
11FV|1|I|G|1763
11FV|1|I|C|1764
*
11FV|1|I|G|1988
11FV|1|I|G|1989
11FV|1|I|C|1990
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Large ribosomal subunit protein uL3
- Chain S
- Large ribosomal subunit protein uL14
- Chain X
- Large ribosomal subunit protein bL19
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