J5_11GG_001

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUGG*CGUG*CUUUAAGU*ACAGAAUAAG*CAAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11GG|1|C|C|36
11GG|1|C|U|37
11GG|1|C|G|38
11GG|1|C|G|39
*
11GG|1|C|C|397
11GG|1|C|G|398
11GG|1|C|U|399
11GG|1|C|G|400
*
11GG|1|C|C|430
11GG|1|C|U|431
11GG|1|C|U|432
11GG|1|C|U|433
11GG|1|C|A|434
11GG|1|C|A|435
11GG|1|C|G|436
11GG|1|C|U|437
*
11GG|1|C|A|485
11GG|1|C|C|486
11GG|1|C|A|487
11GG|1|C|G|488
11GG|1|C|A|489
11GG|1|C|A|490
11GG|1|C|U|491
11GG|1|C|A|492
11GG|1|C|A|493
11GG|1|C|G|494
*
11GG|1|C|C|539
11GG|1|C|A|540
11GG|1|C|A|541
11GG|1|C|G|542

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS4

Chain t

30S ribosomal protein S12