J5_11HG_001

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

11HG|1|18|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11HG_001 not in the Motif Atlas

Homologous match to J5_9H3G_007

Geometric discrepancy: 0.1355

The information below is about J5_9H3G_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

11HG|1|18|C|30
11HG|1|18|U|31
11HG|1|18|U|32
11HG|1|18|G|33
11HG|1|18|U|34
*
11HG|1|18|A|521
11HG|1|18|A|522
11HG|1|18|A|523
11HG|1|18|U|524
11HG|1|18|A|525
11HG|1|18|A|526
11HG|1|18|C|527
*
11HG|1|18|G|558
11HG|1|18|G|559
11HG|1|18|A|560
11HG|1|18|A|561
11HG|1|18|U|562
11HG|1|18|G|563
*
11HG|1|18|C|592
11HG|1|18|C|593
11HG|1|18|A|594
11HG|1|18|U|595
*
11HG|1|18|A|641
11HG|1|18|U|642
11HG|1|18|A|643
11HG|1|18|G|644

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

uS12

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30