Motif J5_04786.3 Version J5_04786.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 1-25 | 2-24 | 5-6 | 9-20 | 10-15 | 11-14 | 12-13 | 18-19 | 21-22 | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8GLP_006 | 8GLP | 0.1049 | 1 | S2 | SSU rRNA | C | 30 | U | 31 | U | 32 | G | 33 | PSU | 34 | * | A | 521 | A | 522 | A | 523 | U | 524 | A | 525 | A | 526 | C | 527 | * | G | 558 | G | 559 | A | 560 | A | 561 | U | 562 | G | 563 | * | C | 592 | A | 594 | U | 595 | * | A | 641 | U | 642 | A | 643 | OMG | 644 | cWW | cWW | cWH | cwW | cWW | cWW | cWW | cWW | |
| 2 | J5_8CRE_018 | 8CRE | 0.0670 | 1 | CM | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 471 | A | 472 | A | 473 | U | 474 | A | 475 | A | 476 | C | 477 | * | G | 507 | G | 508 | A | 509 | A | 510 | U | 511 | G | 512 | * | C | 541 | A | 543 | U | 544 | * | A | 590 | A | 591 | A | 592 | G | 593 | cWW | cWW | cWH | cwW | cWW | cWW | cWW | cWW | |
| 3 | J5_9H3G_007 | 9H3G | 0.0000 | 1 | h1 | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 475 | A | 476 | A | 477 | U | 478 | A | 479 | A | 480 | C | 481 | * | G | 511 | G | 512 | A | 513 | A | 514 | U | 515 | G | 516 | * | C | 545 | A | 547 | U | 548 | * | A | 594 | U | 595 | A | 596 | OMG | 597 | cWW | ntsS | cWW | cWH | cwW | cWW | cWW | cWW | cWW |
| 4 | J5_9PN5_007 | 9PN5 | 0.0736 | 1 | B5 | SSU rRNA | C | 31 | U | 32 | U | 33 | G | 34 | U | 35 | * | A | 473 | A | 474 | A | 475 | U | 476 | A | 477 | A | 478 | C | 479 | * | G | 509 | G | 510 | A | 511 | A | 512 | U | 513 | G | 514 | * | C | 543 | A | 545 | U | 546 | * | A | 592 | U | 593 | A | 594 | G | 595 | cWW | cWW | cWH | cwW | ntHH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGPSU*AAAUAAC*GGAAUG*CCAU*AUAOMG | 1 |
| CUUGU*AAAUAAC*GGAAUG*CAAU*AAAG | 1 |
| CUUGU*AAAUAAC*GGAAUG*CCAU*AUAOMG | 1 |
| CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUG*AAUAA*GAAU*CA*UA | 2 |
| UUG*AAUAA*GAAU*AA*AA | 1 |
| UUG*AAUAA*GAAU*AA*UA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.12
Coloring options: