J5_11HG_008
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 11HG|1|28|C|2289, 11HG|1|28|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11HG_008 not in the Motif Atlas
- Homologous match to J5_8GLP_002
- Geometric discrepancy: 0.0463
- The information below is about J5_8GLP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.3
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
11HG|1|28|G|1335
11HG|1|28|G|1336
11HG|1|28|A|1337
11HG|1|28|G|1338
11HG|1|28|U|1339
11HG|1|28|C|1340
*
11HG|1|28|G|1516
11HG|1|28|G|1517
11HG|1|28|A|1518
11HG|1|28|C|1519
*
11HG|1|28|G|1658
11HG|1|28|U|1659
11HG|1|28|U|1660
11HG|1|28|C|1661
*
11HG|1|28|G|2288
11HG|1|28|C|2289
11HG|1|28|C|2290
*
11HG|1|28|G|2345
11HG|1|28|C|2346
11HG|1|28|A|2347
11HG|1|28|G|2348
11HG|1|28|A|2349
11HG|1|28|U|2350
11HG|1|28|C|2351
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 13
- 60S ribosomal protein L13
- Chain 15
- 60S ribosomal protein L15
- Chain 32
- Large ribosomal subunit protein eL32
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
- Chain dd
- 60S ribosomal protein L27a
- Chain gg
- 60S ribosomal protein L28
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