Motif J5_08384.3 Version J5_08384.3 of this group appears in releases 4.10 to 4.10

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10	break		11		12		13		14	break		15		16	break		17		18		19		20		21		22	1-22	2-21	3-11	3-18	4-12	5-9	6-7	10-11	14-15	16-17
1	J5_8OI5_002	8OI5	0.0490	1	1	LSU rRNA	G	656	G	657	A	658	G	659	U	660	C	661	*	G	795	G	796	A	797	C	798	*	G	937	U	938	U	939	C	940	*	G	1371	C	1372	*	G	1427	C	1428	A	1429	G	1430	A	1431	C	1433	cWW	ntSH	tSs	tHW	cWS	tWS	cWW	cWW	cWW	cWW
2	J5_9PN5_002	9PN5	0.0305	1	A1	LSU rRNA	G	658	G	659	A	660	G	661	U	662	C	663	*	G	799	G	800	A	801	C	802	*	G	941	U	942	U	943	C	944	*	G	1375	C	1376	*	G	1431	C	1432	A	1433	G	1434	A	1435	C	1437	cWW	tSH	tSs	tHW	cWS	tWS	cWW	cWW	cWW	cWW
3	J5_9AXU_002	9AXU	0.0000	1	2	LSU rRNA	G	683	G	684	A	685	G	686	U	687	C	688	*	G	831	G	832	A	833	C	834	*	G	973	U	974	U	975	C	976	*	G	1409	C	1410	*	G	1465	C	1466	A	1467	G	1468	A	1469	C	1471	cWW	tSH	tSs	tHW	cWS	tWS	cWW	cWW	cWW	cWW
4	J5_9H3G_002	9H3G	0.0339	1	A	LSU rRNA	G	670	G	671	A	672	G	673	U	674	OMC	675	*	G	808	G	809	A	810	C	811	*	G	950	U	951	U	952	C	953	*	G	1385	C	1386	*	G	1440	C	1441	A	1442	G	1443	A	1444	OMC	1446	cWW	tSH	tSs	tHW	cWS	tWS	cWW	cWW	cWW	cWW
5	J5_8GLP_002	8GLP	0.0377	2	L5	LSU rRNA	G	1335	G	1336	A	1337	G	1338	U	1339	OMC	1340	*	G	1516	G	1517	A	1518	C	1519	*	G	1658	U	1659	U	1660	C	1661	*	G	2288	C	2290	*	G	2345	C	2346	A	2347	G	2348	A	2349	OMC	2351	cWW	tSH	tSs	tHW	cWS	tWS	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAGUCGGACGUUCGCGCAGAUC	3
GGAGUOMCGGACGUUCGCGCAGAUOMC	1
GGAGUOMCGGACGUUCGCCGCAGAUOMC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGUGAUU**CAGAU	4
GAGUGAUUCCAGAU	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Heat map statistics: Min 0.03 | Avg 0.03 | Max 0.06

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.1292 s