J5_11IQ_004

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

11IQ|1|18|G|126, 11IQ|1|18|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11IQ|1|18|G|123
11IQ|1|18|U|124
11IQ|1|18|C|125
11IQ|1|18|G|126
11IQ|1|18|C|127
11IQ|1|18|U|128
11IQ|1|18|C|129
11IQ|1|18|G|130
*
11IQ|1|18|C|182
11IQ|1|18|G|183
11IQ|1|18|G|184
11IQ|1|18|G|185
*
11IQ|1|18|U|214
11IQ|1|18|G|215
*
11IQ|1|18|C|310
11IQ|1|18|C|311
11IQ|1|18|G|312
*
11IQ|1|18|C|337
11IQ|1|18|G|338
11IQ|1|18|A|339
11IQ|1|18|C|340
11IQ|1|18|C|341

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8