J5_11JJ_004
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 11JJ|1|18|C|687, 11JJ|1|18|U|688, 11JJ|1|18|U|743, 11JJ|1|18|U|871, 11JJ|1|18|G|873, 11JJ|1|18|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|18|A|685
11JJ|1|18|U|686
11JJ|1|18|C|687
11JJ|1|18|U|688
11JJ|1|18|U|689
11JJ|1|18|G|690
*
11JJ|1|18|C|736
11JJ|1|18|U|743
11JJ|1|18|G|744
*
11JJ|1|18|C|797
11JJ|1|18|G|798
11JJ|1|18|U|799
11JJ|1|18|U|800
*
11JJ|1|18|A|865
11JJ|1|18|U|866
11JJ|1|18|G|867
11JJ|1|18|G|868
11JJ|1|18|A|869
11JJ|1|18|A|870
11JJ|1|18|U|871
11JJ|1|18|A|872
11JJ|1|18|G|873
11JJ|1|18|G|874
*
11JJ|1|18|C|912
11JJ|1|18|A|913
11JJ|1|18|U|914
11JJ|1|18|G|915
11JJ|1|18|A|916
11JJ|1|18|U|917
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain DD
- Small ribosomal subunit protein uS17
- Chain FF
- 40S ribosomal protein S13
- Chain RR
- 40S ribosomal protein S23
- Chain S4
- 40S ribosomal protein S4
- Chain S7
- Small ribosomal subunit protein eS7
- Chain WX
- 40S ribosomal protein S15a
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