J5_11JJ_007
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 11JJ|1|28|G|3620, 11JJ|1|28|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11JJ_007 not in the Motif Atlas
- Homologous match to J5_8GLP_003
- Geometric discrepancy: 0.0511
- The information below is about J5_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
11JJ|1|28|G|2855
11JJ|1|28|C|2856
11JJ|1|28|A|2857
11JJ|1|28|A|2858
11JJ|1|28|G|2859
11JJ|1|28|C|2860
11JJ|1|28|C|2861
11JJ|1|28|G|2862
11JJ|1|28|G|2863
*
11JJ|1|28|U|2887
11JJ|1|28|G|2888
*
11JJ|1|28|U|3613
11JJ|1|28|G|3614
*
11JJ|1|28|C|3618
11JJ|1|28|G|3619
11JJ|1|28|G|3620
11JJ|1|28|A|3621
11JJ|1|28|C|3622
11JJ|1|28|C|3623
11JJ|1|28|A|3624
11JJ|1|28|G|3625
11JJ|1|28|G|3626
*
11JJ|1|28|C|3835
11JJ|1|28|A|3836
11JJ|1|28|C|3837
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 19
- 60S ribosomal protein L19
- Chain 23
- Large ribosomal subunit protein uL14
- Chain L3
- 60S ribosomal protein L3
- Chain W
- Ribosomal protein L24
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