J5_11JJ_008
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 11JJ|1|28|A|3908, 11JJ|1|28|A|4394, 11JJ|1|28|U|4555, 11JJ|1|28|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|A|3903
11JJ|1|28|G|3904
11JJ|1|28|A|3905
11JJ|1|28|A|3906
11JJ|1|28|G|3907
11JJ|1|28|A|3908
11JJ|1|28|C|3909
11JJ|1|28|C|3910
*
11JJ|1|28|G|4392
11JJ|1|28|G|4393
11JJ|1|28|A|4394
11JJ|1|28|U|4395
11JJ|1|28|A|4396
11JJ|1|28|A|4397
11JJ|1|28|C|4398
11JJ|1|28|U|4399
11JJ|1|28|G|4400
*
11JJ|1|28|C|4444
11JJ|1|28|U|4445
11JJ|1|28|U|4446
11JJ|1|28|C|4447
11JJ|1|28|G|4448
11JJ|1|28|A|4449
11JJ|1|28|U|4450
11JJ|1|28|G|4451
11JJ|1|28|U|4452
11JJ|1|28|C|4453
*
11JJ|1|28|G|4528
11JJ|1|28|G|4529
11JJ|1|28|U|4530
11JJ|1|28|U|4531
11JJ|1|28|U|4532
11JJ|1|28|A|4533
11JJ|1|28|G|4534
*
11JJ|1|28|U|4552
11JJ|1|28|A|4553
11JJ|1|28|G|4554
11JJ|1|28|U|4555
11JJ|1|28|U|4556
11JJ|1|28|U|4557
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 17
- 60S ribosomal protein L17
- Chain 29
- Large ribosomal subunit protein eL29
- Chain L3
- 60S ribosomal protein L3
- Chain L4
- 60S ribosomal protein L4
- Chain L8
- 60S ribosomal protein L8
- Chain dd
- 60S ribosomal protein L27a
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