J5_11KH_009
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 11KH|1|28|G|3922, 11KH|1|28|A|4376, 11KH|1|28|G|4377, 11KH|1|28|A|4378, 11KH|1|28|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11KH_009 not in the Motif Atlas
- Homologous match to J5_9H3G_006
- Geometric discrepancy: 0.0678
- The information below is about J5_9H3G_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.3
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
11KH|1|28|U|3920
11KH|1|28|U|3921
11KH|1|28|G|3922
11KH|1|28|A|3923
*
11KH|1|28|U|4188
11KH|1|28|U|4189
11KH|1|28|U|4190
11KH|1|28|G|4191
*
11KH|1|28|C|4204
11KH|1|28|A|4205
*
11KH|1|28|U|4227
11KH|1|28|G|4228
*
11KH|1|28|C|4375
11KH|1|28|A|4376
11KH|1|28|G|4377
11KH|1|28|A|4378
11KH|1|28|A|4379
11KH|1|28|A|4380
11KH|1|28|A|4381
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain 21
- 60S ribosomal protein L21
- Chain 29
- Large ribosomal subunit protein eL29
- Chain 42
- eL42
- Chain IF
- IFRD2
- Chain L8
- 60S ribosomal protein L8
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
Coloring options: