Motif J5_96125.3 Version J5_96125.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 1-14 | 2-3 | 3-4 | 4-13 | 5-14 | 7-8 | 9-10 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8GLP_005 | 8GLP | 0.1650 | 5 | L5 | LSU rRNA | PSU | 3920 | U | 3921 | A | 3923 | * | U | 4188 | U | 4189 | U | 4190 | G | 4191 | * | C | 4204 | A | 4205 | * | OMU | 4227 | OMG | 4228 | * | C | 4375 | A | 4380 | A | 4381 | cWW | cWH | cWW | ntsS | cWH | cWW | cWW | cWW |
| 2 | J5_9E6Q_007 | 9E6Q | 0.1383 | 5 | 1 | LSU rRNA | U | 2194 | U | 2195 | A | 2197 | * | U | 2354 | U | 2355 | C | 2356 | G | 2357 | * | C | 2370 | A | 2371 | * | U | 2393 | G | 2394 | * | C | 2543 | A | 2548 | A | 2549 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
| 3 | J5_9H3G_006 | 9H3G | 0.0780 | 5 | A | LSU rRNA | PSU | 2414 | U | 2415 | A | 2417 | * | U | 2610 | U | 2611 | U | 2612 | G | 2613 | * | C | 2626 | A | 2627 | * | UY1 | 2649 | OMG | 2650 | * | C | 2797 | A | 2802 | A | 2803 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
| 4 | J5_8OI5_006 | 8OI5 | 0.0000 | 5 | 1 | LSU rRNA | U | 2394 | U | 2395 | A | 2397 | * | U | 2583 | U | 2584 | U | 2585 | G | 2586 | * | C | 2599 | A | 2600 | * | U | 2622 | G | 2623 | * | C | 2770 | A | 2775 | A | 2776 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
| 5 | J5_9PN5_006 | 9PN5 | 0.0524 | 5 | A1 | LSU rRNA | PSU | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | * | C | 2798 | A | 2803 | A | 2804 | cWW | cWH | cWW | ntsS | cWH | cWW | cWW | cWW |
| 6 | J5_9AXU_007 | 9AXU | 0.1475 | 5 | 2 | LSU rRNA | U | 2504 | U | 2505 | A | 2507 | * | U | 2706 | U | 2707 | U | 2708 | G | 2709 | * | C | 2722 | A | 2723 | * | U | 2745 | G | 2746 | * | C | 2893 | A | 2898 | A | 2899 | cWW | cWH | cWW | ntsS | cWH | cWW | ncWW | cWW |
| 7 | J5_4V9F_008 | 4V9F | 0.1963 | 5 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | * | C | 2464 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGA*UUUG*CA*UG*CAGAAAA | 2 |
| PSUUGA*UUUG*CA*OMUOMG*CAGAAAA | 1 |
| UUCA*UUCG*CA*UG*CAGAAAA | 1 |
| PSUUGA*UUUG*CA*UY1OMG*CAGAAAA | 1 |
| PSUUGA*UUUG*CA*UG*CAGAAAA | 1 |
| UUUA*UUUG*CG*CG*CAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*UU***AGAAA | 5 |
| UC*UC***AGAAA | 1 |
| UU*UU***AGAAA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Heat map statistics
- Min 0.05 | Avg 0.14 | Max 0.23
Coloring options: