J5_12DP_010

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

12DP|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_12DP_010 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0827

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.4

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

12DP|1|2A|C|47
12DP|1|2A|G|48
12DP|1|2A|A|49
12DP|1|2A|U|50
12DP|1|2A|G|51
12DP|1|2A|A|52
12DP|1|2A|A|53
12DP|1|2A|G|54
*
12DP|1|2A|C|116
12DP|1|2A|G|117
12DP|1|2A|A|118
12DP|1|2A|A|119
12DP|1|2A|U|120
12DP|1|2A|G|121
*
12DP|1|2A|C|130
12DP|1|2A|G|131
*
12DP|1|2A|C|148
12DP|1|2A|A|149
12DP|1|2A|C|150
*
12DP|1|2A|G|176
12DP|1|2A|G|177
12DP|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23