J5_12DQ_004
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 12DQ|1|1A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_12DQ_004 not in the Motif Atlas
- Homologous match to J5_8B0X_006
- Geometric discrepancy: 0.0842
- The information below is about J5_8B0X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
12DQ|1|1A|C|584
12DQ|1|1A|G|585
12DQ|1|1A|A|586
12DQ|1|1A|C|587
12DQ|1|1A|U|588
12DQ|1|1A|C|589
*
12DQ|1|1A|G|668
12DQ|1|1A|G|669
12DQ|1|1A|A|670
12DQ|1|1A|C|671
*
12DQ|1|1A|G|809
12DQ|1|1A|U|810
12DQ|1|1A|U|811
12DQ|1|1A|C|812
*
12DQ|1|1A|G|1195
12DQ|1|1A|C|1196
*
12DQ|1|1A|G|1250
12DQ|1|1A|C|1251
12DQ|1|1A|G|1252
12DQ|1|1A|A|1253
12DQ|1|1A|A|1254
12DQ|1|1A|U|1255
12DQ|1|1A|G|1256
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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