J5_8B0X_006
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8B0X|1|a|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B0X_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.028
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8B0X|1|a|C|586
8B0X|1|a|G|587
8B0X|1|a|A|588
8B0X|1|a|C|589
8B0X|1|a|U|590
8B0X|1|a|U|591
*
8B0X|1|a|A|670
8B0X|1|a|G|671
8B0X|1|a|A|672
8B0X|1|a|C|673
*
8B0X|1|a|G|811
8B0X|1|a|U|812
8B0X|1|a|U|813
8B0X|1|a|C|814
*
8B0X|1|a|G|1197
8B0X|1|a|C|1198
*
8B0X|1|a|G|1252
8B0X|1|a|C|1253
8B0X|1|a|G|1254
8B0X|1|a|A|1255
8B0X|1|a|A|1256
8B0X|1|a|U|1257
8B0X|1|a|G|1258
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
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