J5_12DQ_010

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

12DQ|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_12DQ_010 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0783

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.4

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

12DQ|1|2A|C|47
12DQ|1|2A|G|48
12DQ|1|2A|A|49
12DQ|1|2A|U|50
12DQ|1|2A|G|51
12DQ|1|2A|A|52
12DQ|1|2A|A|53
12DQ|1|2A|G|54
*
12DQ|1|2A|C|116
12DQ|1|2A|G|117
12DQ|1|2A|A|118
12DQ|1|2A|A|119
12DQ|1|2A|U|120
12DQ|1|2A|G|121
*
12DQ|1|2A|C|130
12DQ|1|2A|G|131
*
12DQ|1|2A|C|148
12DQ|1|2A|A|149
12DQ|1|2A|C|150
*
12DQ|1|2A|G|176
12DQ|1|2A|G|177
12DQ|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23