J5_1FFK_008
3D structure
- PDB id
- 1FFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 1FFK|1|0|U|2117, 1FFK|1|0|A|2465, 1FFK|1|0|G|2466, 1FFK|1|0|A|2467, 1FFK|1|0|A|2468
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1FFK_008 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.0265
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
1FFK|1|0|U|2115
1FFK|1|0|U|2116
1FFK|1|0|U|2117
1FFK|1|0|A|2118
*
1FFK|1|0|U|2276
1FFK|1|0|U|2277
1FFK|1|0|U|2278
1FFK|1|0|G|2279
*
1FFK|1|0|C|2292
1FFK|1|0|G|2293
*
1FFK|1|0|C|2315
1FFK|1|0|G|2316
*
1FFK|1|0|C|2464
1FFK|1|0|A|2465
1FFK|1|0|G|2466
1FFK|1|0|A|2467
1FFK|1|0|A|2468
1FFK|1|0|A|2469
1FFK|1|0|A|2470
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain I
- RIBOSOMAL PROTEIN L15E
- Chain J
- RIBOSOMAL PROTEIN L15
- Chain Z
- RIBOSOMAL PROTEIN L44E
Coloring options: