J5_1FFZ_002

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CAGAAAA

Length

19 nucleotides

Bulged bases

1FFZ|1|A|U|2117, 1FFZ|1|A|A|2465, 1FFZ|1|A|G|2466, 1FFZ|1|A|A|2467, 1FFZ|1|A|A|2468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1FFZ_002 not in the Motif Atlas

Homologous match to J5_4V9F_008

Geometric discrepancy: 0.0445

The information below is about J5_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_96125.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

1FFZ|1|A|U|2115
1FFZ|1|A|U|2116
1FFZ|1|A|U|2117
1FFZ|1|A|A|2118
*
1FFZ|1|A|U|2276
1FFZ|1|A|U|2277
1FFZ|1|A|U|2278
1FFZ|1|A|G|2279
*
1FFZ|1|A|C|2292
1FFZ|1|A|G|2293
*
1FFZ|1|A|C|2315
1FFZ|1|A|G|2316
*
1FFZ|1|A|C|2464
1FFZ|1|A|A|2465
1FFZ|1|A|G|2466
1FFZ|1|A|A|2467
1FFZ|1|A|A|2468
1FFZ|1|A|A|2469
1FFZ|1|A|A|2470

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains