J5_1I96_003
3D structure
- PDB id
- 1I96 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 1I96|1|A|A|102, 1I96|1|A|C|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1I96_003 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0888
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1I96|1|A|C|58
1I96|1|A|A|59
1I96|1|A|A|60
1I96|1|A|G|61
*
1I96|1|A|C|99
1I96|1|A|G|100
1I96|1|A|G|101
1I96|1|A|A|102
1I96|1|A|C|103
1I96|1|A|G|104
1I96|1|A|G|105
1I96|1|A|G|106
*
1I96|1|A|C|309
1I96|1|A|A|310
1I96|1|A|G|311
*
1I96|1|A|C|332
1I96|1|A|A|333
1I96|1|A|C|334
*
1I96|1|A|G|345
1I96|1|A|G|346
1I96|1|A|C|347
1I96|1|A|A|348
1I96|1|A|G|349
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: