3D structure

PDB id
1IBK (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.31 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
1IBK|1|A|A|109, 1IBK|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_1IBK_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0585
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

1IBK|1|A|C|58
1IBK|1|A|A|59
1IBK|1|A|A|60
1IBK|1|A|G|61
*
1IBK|1|A|C|106
1IBK|1|A|G|107
1IBK|1|A|G|108
1IBK|1|A|A|109
1IBK|1|A|C|110
1IBK|1|A|G|111
1IBK|1|A|G|112
1IBK|1|A|G|113
*
1IBK|1|A|C|314
1IBK|1|A|A|315
1IBK|1|A|G|316
*
1IBK|1|A|C|337
1IBK|1|A|A|338
1IBK|1|A|C|339
*
1IBK|1|A|G|350
1IBK|1|A|G|351
1IBK|1|A|C|352
1IBK|1|A|A|353
1IBK|1|A|G|354

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain P
30S RIBOSOMAL PROTEIN S16
Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


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