J5_1IBM_002

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1IBM|1|A|A|109, 1IBM|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1IBM_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0515

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1IBM|1|A|C|58
1IBM|1|A|A|59
1IBM|1|A|A|60
1IBM|1|A|G|61
*
1IBM|1|A|C|106
1IBM|1|A|G|107
1IBM|1|A|G|108
1IBM|1|A|A|109
1IBM|1|A|C|110
1IBM|1|A|G|111
1IBM|1|A|G|112
1IBM|1|A|G|113
*
1IBM|1|A|C|314
1IBM|1|A|A|315
1IBM|1|A|G|316
*
1IBM|1|A|C|337
1IBM|1|A|A|338
1IBM|1|A|C|339
*
1IBM|1|A|G|350
1IBM|1|A|G|351
1IBM|1|A|C|352
1IBM|1|A|A|353
1IBM|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20