J5_1J5A_004

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUGCAAUCUCAC*GUC*GC*GUGAAUAGG*CGCUGU

Length

35 nucleotides

Bulged bases

1J5A|1|A|G|1749, 1J5A|1|A|G|1754, 1J5A|1|A|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|A|1686
1J5A|1|A|C|1687
1J5A|1|A|U|1688
1J5A|1|A|U|1689
1J5A|1|A|U|1690
1J5A|1|A|G|1691
1J5A|1|A|C|1692
1J5A|1|A|A|1693
1J5A|1|A|A|1694
1J5A|1|A|U|1695
1J5A|1|A|C|1696
1J5A|1|A|U|1697
1J5A|1|A|C|1698
1J5A|1|A|A|1699
1J5A|1|A|C|1700
*
1J5A|1|A|G|1722
1J5A|1|A|U|1723
1J5A|1|A|C|1724
*
1J5A|1|A|G|1742
1J5A|1|A|C|1743
*
1J5A|1|A|G|1747
1J5A|1|A|U|1748
1J5A|1|A|G|1749
1J5A|1|A|A|1750
1J5A|1|A|A|1751
1J5A|1|A|U|1752
1J5A|1|A|A|1753
1J5A|1|A|G|1754
1J5A|1|A|G|1755
*
1J5A|1|A|C|1971
1J5A|1|A|G|1972
1J5A|1|A|C|1973
1J5A|1|A|U|1974
1J5A|1|A|G|1975
1J5A|1|A|U|1976

Current chains

Chain A

23S RRNA

Nearby chains