Loop J5_1J5A

3D structure

PDB id: 1J5A (explore in PDB, NAKB, or RNA 3D Hub)
Description: STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU
Length: 44 nucleotides
Bulged bases: 1J5A|1|A|C|2038, 1J5A|1|A|A|2045, 1J5A|1|A|A|2427, 1J5A|1|A|U|2588, 1J5A|1|A|C|2589, 1J5A|1|A|A|2593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1J5A|1|A|A|2037
1J5A|1|A|C|2038
1J5A|1|A|G|2039
1J5A|1|A|A|2040
1J5A|1|A|A|2041
1J5A|1|A|A|2042
1J5A|1|A|A|2043
1J5A|1|A|G|2044
1J5A|1|A|A|2045
1J5A|1|A|C|2046
1J5A|1|A|C|2047
*
1J5A|1|A|G|2425
1J5A|1|A|G|2426
1J5A|1|A|A|2427
1J5A|1|A|U|2428
1J5A|1|A|A|2429
1J5A|1|A|A|2430
1J5A|1|A|C|2431
1J5A|1|A|A|2432
*
1J5A|1|A|U|2479
1J5A|1|A|C|2480
1J5A|1|A|G|2481
1J5A|1|A|A|2482
1J5A|1|A|U|2483
1J5A|1|A|G|2484
1J5A|1|A|U|2485
1J5A|1|A|C|2486
*
1J5A|1|A|G|2561
1J5A|1|A|G|2562
1J5A|1|A|U|2563
1J5A|1|A|U|2564
1J5A|1|A|C|2565
1J5A|1|A|A|2566
1J5A|1|A|G|2567
*
1J5A|1|A|C|2585
1J5A|1|A|G|2586
1J5A|1|A|G|2587
1J5A|1|A|U|2588
1J5A|1|A|C|2589
1J5A|1|A|U|2590
1J5A|1|A|C|2591
1J5A|1|A|U|2592
1J5A|1|A|A|2593
1J5A|1|A|U|2594

Current chains

Chain A: 23S RRNA

Nearby chains

Chain K: RIBOSOMAL PROTEIN L4
Chain L: RIBOSOMAL PROTEIN L22
Chain M: RIBOSOMAL PROTEIN L32

J5_1J5A_005