J5_1JZX_006

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

1JZX|1|A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1JZX_006 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1932

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1JZX|1|A|C|46
1JZX|1|A|G|47
1JZX|1|A|A|48
1JZX|1|A|U|49
1JZX|1|A|G|50
1JZX|1|A|A|51
1JZX|1|A|A|52
1JZX|1|A|G|53
*
1JZX|1|A|C|114
1JZX|1|A|G|115
1JZX|1|A|A|116
1JZX|1|A|A|117
1JZX|1|A|U|118
1JZX|1|A|G|119
*
1JZX|1|A|C|128
1JZX|1|A|A|129
*
1JZX|1|A|U|142
1JZX|1|A|A|143
*
1JZX|1|A|U|154
1JZX|1|A|G|155

Current chains

Chain A

23S rRNA

Nearby chains