J5_1K01_006

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

1K01|1|A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1K01_006 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.1917

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1K01|1|A|C|46
1K01|1|A|G|47
1K01|1|A|A|48
1K01|1|A|U|49
1K01|1|A|G|50
1K01|1|A|A|51
1K01|1|A|A|52
1K01|1|A|G|53
*
1K01|1|A|C|114
1K01|1|A|G|115
1K01|1|A|A|116
1K01|1|A|A|117
1K01|1|A|U|118
1K01|1|A|G|119
*
1K01|1|A|C|128
1K01|1|A|A|129
*
1K01|1|A|U|142
1K01|1|A|A|143
*
1K01|1|A|U|154
1K01|1|A|G|155

Current chains

Chain A

23S rRNA

Nearby chains